Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015926091.1_cds_XP_016474174.1_66227
CDS Infomation

[gene=LOC107795979] [db_xref=GeneID:107795979] [protein=ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like] [protein_id=XP_016474174.1] [location=complement(join(24723..25064,25165..25405,25661..25974,26074..26614,27235..27821))] [gbkey=CDS]
Sequence

ATGAAAATGTCCCCTGCCCTTTCTTTGTCTGTCATTCAATTTCCCCTATGCAAATCCCAA
GATCTTTCTAAGGATACTAACAATCCTAAAATCTTTAGTAAAGAAACCCCATGTCAAAAA
TCATATTCAGACACCAGAATAAATAGGAGGAAGCTGTTGAGTGGTAGTGGTTTGAGCCTT
GTAGCAGGGACTTTGGCTAAACCAGCAAGAGCAGAAACTGAAGCACCAATTGAAGCAACT
TCAAGTAGAATGTCATATTCAAGATTCTTGGAATACTTGAATGAAGGTGCTGTGAAAAAA
GTTGATTTTTTTGAGAGTAGTGCTGTTGCTGAGATATTCAATCCTGCTCTTAACAAAGTC
CAGAGAGTTAAAGTTCAGTTGCCAGGATTGCCACCAGAATTGGTGAGAAAACTTAGAGAG
AAGGATGTAGATTTTGCTGCTCATCTCCCTGAAATGAATGTCATAGGGCCACTTCTTGAT
TTACTTGGGAATTTAGCTTTTCCATTGATATTGCTTGGCTCTTTGCTGTTGAGAACCTCT
TCTTCAAATACTCCTGGAGGGCCAAACCTGCCTTTTGGATTAGGAAGGAGCAAAGCAAAA
TTCCAGATGGAACCAAATACAGGAGTAACATTTGATGATGTGGCTGGGGTAGATGATGCA
AAGCAAGATTTTCAAGAGATTGTTGAGTTCTTGAAAACCCCAGAAAAGTTTGCAGCAGTT
GGGGCAAAGATACCAAAGGGAGTTCTCTTAGTAGGGCCACCAGGGACAGGGAAGACATTG
CTAGCTAAGGCGATTGCCGGAGAAGCAGAGGTTCCATTCTTATCTCTCTCTGGTTCAGAG
TTTGTTGAGATGTTTGTTGGTGTGGGAGCTTCTAGAGTTAGGGACTTATTCAACAAGGCA
AAGGAAAATTCACCTTGTTTAGTCTTTATTGATGAGATTGATGCTGTTGGGAGGCAAAGA
GGAACTGGTATTGGCGGTGGAAATGATGAAAGAGAGCAGACACTTAACCAACTTCTCACT
GAAATGGATGGTTTCACTGGAAACACTGGAGTCATTGTCATTGCTGCCACTAATAGGCCT
GAAATTCTTGATCAAGCTTTGCTTCGACCTGGAAGATTTGATAGACAGGTAAGTGTTGGA
CTGCCTGATATAAGAGGAAGGGAAGAAATATTGAAGGTTCATAGTAACAACAAGAAGCTT
GATAAAGATGTGTCTCTAAGTGTTATTGCAATGAGAACTCCAGGATTCAGTGGTGCAGAT
CTTGCAAACCTCATGAATGAAGCTGCTATTCTAGCTGGAAGAAGAGGAAAAGATAAGATT
ACCTCGAAAGAGATTGATGATTCCATCGATAGAATTGTTGCTGGAATGGAAGGAACCAAG
ATGACAGATGGCAAAAACAAGATTTTGGTAGCATATCATGAAGTTGGACATGGTGTCTGC
GCGACATTGACCCCTGGCCATGATGCAGTACAGAAAGTTACATTGATCCCAAGAGGGCAA
GCTCGCGGTCTTACATGGTTTATTCCTGGTGAAGATCCAACCTTGATATCTAAGCAGCAA
CTTTTTGCTAGAATAGTTGGAAGCTTAGGAGGTAGAGCAGCAGAGGAAATAATTTTTGGT
GAAGCAGAAATCACTACTGGTGCAGCCGGAGACTTGCAACAAATAACTCAAATAGCAAGA
CAGATGGTGACAATGTTCGGGATGTCTGAGATAGGACCATGGGCGTTAACAGATCCAGCA
ACACAGAGTGGTGATGTGGTGCTGAGAATGCTGGCGAGGAATCAAATGTCAGAGAAACTA
GCAGAAGACATTGATGCATCGGTAAGGCACATAATTGAGAGAGCATATGAAATTGCAAAG
AACCACATAAGGAACAACAGGGAGGCAATCGACAAATTAGTGGATGTGTTGCTAGAAAAG
GAGACTCTTACAGGAGATGAATTCAGAGCTATACTCTCTGAATTCACTAATATCCCATCA
GCTAACATAAACAGCAAACCAATTAGAGAACTGATTGAGGCCTAA

Peptide Sequence

PEP ID

XP_016474174.1
PEP Infomation

PREDICTED: ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like [Nicotiana tabacum]
Sequence

MKMSPALSLSVIQFPLCKSQDLSKDTNNPKIFSKETPCQKSYSDTRINRRKLLSGSGLSL
VAGTLAKPARAETEAPIEATSSRMSYSRFLEYLNEGAVKKVDFFESSAVAEIFNPALNKV
QRVKVQLPGLPPELVRKLREKDVDFAAHLPEMNVIGPLLDLLGNLAFPLILLGSLLLRTS
SSNTPGGPNLPFGLGRSKAKFQMEPNTGVTFDDVAGVDDAKQDFQEIVEFLKTPEKFAAV
GAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFLSLSGSEFVEMFVGVGASRVRDLFNKA
KENSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNTGVIVIAATNRP
EILDQALLRPGRFDRQVSVGLPDIRGREEILKVHSNNKKLDKDVSLSVIAMRTPGFSGAD
LANLMNEAAILAGRRGKDKITSKEIDDSIDRIVAGMEGTKMTDGKNKILVAYHEVGHGVC
ATLTPGHDAVQKVTLIPRGQARGLTWFIPGEDPTLISKQQLFARIVGSLGGRAAEEIIFG
EAEITTGAAGDLQQITQIARQMVTMFGMSEIGPWALTDPATQSGDVVLRMLARNQMSEKL
AEDIDASVRHIIERAYEIAKNHIRNNREAIDKLVDVLLEKETLTGDEFRAILSEFTNIPS
ANINSKPIRELIEA

Transcript Sequence

Gene sequence data has not been registered.